PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g031100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 240aa    MW: 26200.1 Da    PI: 9.1986
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g031100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18192225235
            GATA   2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     +nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++
  Csa15g031100.1 192 VNCNAVTTPMWRRGPLGPKSLCNACGIKFRKEEE 225
                     39*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-11185235IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-10188226No hitNo description
PfamPF003204.1E-16190225IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.9E-13192225IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.91E-11192222No hitNo description
PROSITE profilePS5011411.793192221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MENELDLTLK LGLPNSTVVE THLSLNTSTT TSTITDQGTT NTNVVDGGRG DHNNNNEGSR  60
GGSSNNGGEV FNLRRSLWGD NEVINDQVAR SNVDMNIRVY NYIFQQFVGA PNTLNVGPYP  120
MPPSLRSAPA PAVTPEFVLI DVPTRRASRN NTELMANAWN ETPSAHAKRL RGYGGYYSGG  180
RGEGTLRKCT NVNCNAVTTP MWRRGPLGPK SLCNACGIKF RKEEERKAKR NRESLSLDN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g031100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466278.11e-176PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT452e-67GAT29_ARATH; GATA transcription factor 29
TrEMBLR0GBK17e-88R0GBK1_9BRAS; Uncharacterized protein
STRINGXP_010466278.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-53GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]