PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g032270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 125aa    MW: 14087.6 Da    PI: 9.5155
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g032270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.95.8e-32121121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca C ++++ C+++C +apyfp e++++++n+hklFG+ n++k+++++++e+ + +++ss+++e+ a+  dPv+G +g+i+kl++++   k  l
  Csa15g032270.1  12 PCALCTTKNKVCPQNCEFAPYFPGEKKNEYKNAHKLFGTPNIMKMIRSASTEKeKGMLASSILMEGTAWETDPVKGGFGIIQKLKWNILLRKLYL 106
                     7************************************************8877699********************************9999999 PP

          DUF260  95 allkee 100
                     ++lke+
  Csa15g032270.1 107 NELKEK 112
                     999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7911113IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-2712107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDVQVINVTR APCALCTTKN KVCPQNCEFA PYFPGEKKNE YKNAHKLFGT PNIMKMIRSA  60
STEKEKGMLA SSILMEGTAW ETDPVKGGFG IIQKLKWNIL LRKLYLNELK EKIKGVEEET  120
KLHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g032270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466435.15e-88PREDICTED: LOB domain-containing protein 9-like
SwissprotO821982e-56LBD9_ARATH; LOB domain-containing protein 9
TrEMBLR0GAA14e-57R0GAA1_9BRAS; Uncharacterized protein
STRINGXP_010466435.12e-87(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.17e-59LOB domain-containing protein 9