PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g043020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 457aa    MW: 50939.8 Da    PI: 7.7416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g043020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000224769123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  Csa15g043020.1 47 YTCSFCKREFRSAQALGGHMNVH 69
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.8E-64473No hitNo description
SMARTSM003550.00384769IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-64770IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.244774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035586187209IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-4192210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MERSSNIELR NSFYGRARTS PWSYGDYDNY QQDHEYLLGF SWPPRSYTCS FCKREFRSAQ  60
ALGGHMNVHR RDRARLRLQQ SSSSSSTPSP PYPNPNYSYS SMATSPPPPN SPLTLFPTLS  120
PPSSPGYRAG LVRSLSPKSK HTPENACENE KSSLLVEAEE AKRLSKKDAC KFLRNDEIIS  180
LELEIGLIND FCKREFRSAQ ALGGHMNVHR RDRARLRLQQ SSSSSSTPSP PYPNPNYSYS  240
SMATSPPPPH SPLTLFPTLS PPSSPGYRAG LVRSLSPKSK HTPENACENE KSSLLVEAEE  300
AKRLSKKDAC KFLRNDEIIS LELEIGLINE SEQDLDLELR LDLNXNPNYS YSSMATSPPP  360
PHSPLTLFPT LSPPSSPGYR AGLVRSLSPK SKHTPENACE NEKSSLLVEA EEAKRLSKKD  420
ACKFLRNDEI ISLELEIGLI NESEQDLDLE LRLGFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-134269229superman protein
2l1o_A1e-134269229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development. {ECO:0000269|PubMed:11006335, ECO:0000269|PubMed:11943180, ECO:0000269|PubMed:12324589, ECO:0000269|PubMed:1352237, ECO:0000269|PubMed:7477325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g043020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by KRYPTONITE/SUVH4, member of the histone H3-K9 methyltransferase family that contributes with other factors to the CpNpG methylation of the SUP gene resulting in its silencing. The alternative epigenetic states of the SUPERMAN locus have been called Clark Kent alleles. Positively regulated at an early stage of development by LEAFY and by B class homeotic proteins APETALA3 and PISTILLATA. Later expression is maintained by both the B class homeotic proteins and the C class homeotic protein AGAMOUS. These two steps of regulation require the intervention of additional factors. {ECO:0000269|PubMed:11898023}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6508140.0HQ650814.1 Arabidopsis lyrata superman (SUP) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466623.11e-116PREDICTED: transcriptional regulator SUPERMAN isoform X1
RefseqXP_010512086.11e-116PREDICTED: transcriptional regulator SUPERMAN-like
SwissprotQ388951e-104SUP_ARATH; Transcriptional regulator SUPERMAN
TrEMBLD7L2K91e-104D7L2K9_ARALL; Uncharacterized protein
TrEMBLF8SLZ61e-104F8SLZ6_ARALY; Superman
STRINGXP_010512086.11e-115(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.15e-76C2H2 family protein
Publications ? help Back to Top
  1. Breuil-Broyer S, et al.
    Analysis of the Arabidopsis superman allelic series and the interactions with other genes demonstrate developmental robustness and joint specification of male-female boundary, flower meristem termination and carpel compartmentalization.
    Ann. Bot., 2016. 117(5): p. 905-23
    [PMID:27098089]
  2. Prunet N,Yang W,Das P,Meyerowitz EM,Jack TP
    SUPERMAN prevents class B gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(27): p. 7166-7171
    [PMID:28634297]
  3. Uemura A, et al.
    Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
    Plant Reprod, 2018. 31(1): p. 89-105
    [PMID:29218596]
  4. Xu Y, et al.
    SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis.
    EMBO J., 2019.
    [PMID:29764982]