PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g048570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 262aa    MW: 29030.7 Da    PI: 8.2939
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g048570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19184218135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Csa15g048570.1 184 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 218
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-15178228IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.873181214IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-15181241No hitNo description
Gene3DG3DSA:3.30.50.108.3E-15182216IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.02E-14183230No hitNo description
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
PfamPF003203.7E-17184218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEMESFMDDL LNFTVPEEDD EEETQQPRNI TRRKTGIRQT DSLGLLNHGD HGVVEEEDLE  60
WISNKDAFPV IETFVGMLPP EHFRVTSPER EAIEGKQLSP VSVLETSSNS STTTTTSNSS  120
GGSTALATTT SMLMSCCVSF KAPAKARSKR RRTGRRDLRV LWTGNEIQKK KTMSAAAVII  180
GRKCQHCGAE KTPQWRAGPL GPKTLCNACG VRYKSGRLVP EYRPANSPTF TAELHSNSHR  240
KIVEMRKQYQ SGDGDHRKDC G*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g048570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0244970.0BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds.
GenBankY136480.0Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466791.10.0PREDICTED: GATA transcription factor 1-like isoform X1
SwissprotQ8LAU91e-126GATA1_ARATH; GATA transcription factor 1
TrEMBLR0HN961e-127R0HN96_9BRAS; Uncharacterized protein
STRINGXP_010466791.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-117GATA transcription factor 1