PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g052690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 307aa MW: 34685.8 Da PI: 9.7455

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g052690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.4	8.3e-23	59	139	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Lie +e++ +++rg lk ++Wee++ ++ ++ g+ rs++qC++k+e+l+kr++ ++++++ s +p+++q+e Csa15g052690.1 59 WTHDETLLLIESFKEKWYAIGRGPLKSTHWEEIAVAVsARSGVDRSSTQCRHKIEKLRKRFRSERQSMGPI-----SIWPFYNQME 139 *********************************998899************************84.....68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.528	59	116	IPR017877	Myb-like domain
Pfam	PF13837	1.5E-19	59	141	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MATPSPTSSP PSDSNPNSAA TPPHQQPTDP SSPPPSHMTV VALAATTSSV ARKTQPVLWT 60 HDETLLLIES FKEKWYAIGR GPLKSTHWEE IAVAVSARSG VDRSSTQCRH KIEKLRKRFR 120 SERQSMGPIS IWPFYNQMEE MDSNPAPISA RPLTRLPPNS NSHYQDDEEE DQEEEEDNYE 180 KEEEDERQSK SRSINYILRR PGTVNRFAGV GGGLLSWGQR ERSTKRKRNN DGGDGGERRR 240 KGARAVAAEI RAFAERVMVM EKKKMEFAKE TVRLRKEMEI KRINLIKTSQ AQLLQFLNSS 300 FDSSSF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	240	RKRNNDGGDGGERRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g052690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010466922.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	R0I446	1e-168	R0I446_9BRAS; Uncharacterized protein
STRING	XP_010466922.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-121	Trihelix family protein