PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g057060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 423aa    MW: 47757.1 Da    PI: 6.199
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g057060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.84.8e-135624224374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     +L++cA+avs+++l la++++ +l+ ++s +g p+qRl ay++e+L arla s+s++yk+l+++e +     e l+++ +++ev+P++kf+++ a
  Csa15g057060.1  62 VLVACAKAVSENNLLLARWCMGELRGMVSISGAPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPE---RYEFLSYVYVLHEVCPYFKFGYMSA 153
                     79***************************************************************99...899********************** PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                     N aI ea++ eer+HiiDf+i+qG QW++L+qa+a+Rp+g+p++RiTg+g+        l ++++rL+k+A++++vpf+fn+ +++   ++e+ +
  Csa15g057060.1 154 NGAIAEAMKDEERIHIIDFQIGQGSQWISLIQAFAARPGGAPNIRITGIGD-----LSVLVTVKRRLEKLAKKFDVPFKFNA-ISRPSYEVEVPN 242
                     ***************************************************.....88************************.799********* PP

            GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                     L+v++gEal Vn++++lh+l+desvs+e++rd++L++vkslsPkvv++veqe+++n+++Fl rf+e+l+yy+a+f+s+++ lpr+++eri++E++
  Csa15g057060.1 243 LDVREGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFFETLSYYTAMFESIDVMLPRNHKERISIEQH 337
                     *********************************************************************************************** PP

            GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +l+r++vn++acegaer+erhe l+kW++r+++aGF+p+pls+ + +++++llr ++ +gy +ee++g+l+lgW+dr Lvs +aW+
  Csa15g057060.1 338 CLARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYS-NGYGIEERDGALYLGWMDRVLVSSCAWK 422
                     ********************************************************9.9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.26733403IPR005202Transcription factor GRAS
PfamPF035141.6E-13262422IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDNVRGSRHN VREVETIMLQ PLPEIAESIN DAICHELSMW PEDANDLLLI VEAISRGDLK  60
WVLVACAKAV SENNLLLARW CMGELRGMVS ISGAPIQRLG AYMLEGLVAR LAASGSSIYK  120
SLQSREPERY EFLSYVYVLH EVCPYFKFGY MSANGAIAEA MKDEERIHII DFQIGQGSQW  180
ISLIQAFAAR PGGAPNIRIT GIGDLSVLVT VKRRLEKLAK KFDVPFKFNA ISRPSYEVEV  240
PNLDVREGEA LGVNFAYMLH HLPDESVSME NHRDRLLRMV KSLSPKVVTL VEQECNTNTS  300
PFLPRFFETL SYYTAMFESI DVMLPRNHKE RISIEQHCLA RDVVNIIACE GAERIERHEL  360
LGKWKSRFSM AGFEPYPLSS IISATIRALL RDYSNGYGIE ERDGALYLGW MDRVLVSSCA  420
WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-61634228375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g057060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467047.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLD7L8K00.0D7L8K0_ARALL; Uncharacterized protein
STRINGXP_010467047.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]