PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g058660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 120aa    MW: 13784.5 Da    PI: 8.4719
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g058660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like377.4e-1294118125
         G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                     k+rlrW+++LHe+Fv+ave+LGG++
  Csa15g058660.1  94 KARLRWSSDLHECFVNAVEKLGGPN 118
                     78*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-991116IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-894119IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSFQEMEKKE KGKEIVTSEE SRSTSSVHHH FHHKEKKVSM VLSEQEIEFI LQSTSGYKET  60
YKEKLEKSKK DIEKGKRSSS SKITPDIFYT SDEKARLRWS SDLHECFVNA VEKLGGPNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g058660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064134e-43AC006413.4 Arabidopsis thaliana chromosome 2 clone F5K7 map ve013, complete sequence.
GenBankCP0026854e-43CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886266.12e-44transcription repressor KAN1
TrEMBLA0A178VMZ22e-43A0A178VMZ2_ARATH; Uncharacterized protein
STRINGXP_010424609.11e-48(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.15e-35G2-like family protein