PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g071340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 180aa    MW: 20253.3 Da    PI: 4.0953
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g071340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.76.6e-0864786128
             NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     t   k++ + ++ +vg  + L +  gr p+g+ktdW+mhey +
  Csa15g071340.1   6 TVGAKQIDA-GQGDVGYVTALEYCVGRPPNGVKTDWLMHEYWF 47 
                     555677777.8889***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.627167IPR003441NAC domain
SuperFamilySSF1019412.09E-13667IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTVNATVGAK QIDAGQGDVG YVTALEYCVG RPPNGVKTDW LMHEYWFESS TDDNDKVDYA  60
LCKIYLTPSA VKRMKAEKKE KLKKGKGVSK EEVKQLDLQH QQDQSQLQQP HDSLLPAQQH  120
EPQPQPPVTP DDDNFDDFDE LPEDFKDFLA ELMKPDSLDG DEEPDDCDFL QGFNTDGME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g071340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424216.13e-81PREDICTED: NAC transcription factor 29-like
RefseqXP_010424224.13e-81PREDICTED: NAC transcription factor 29-like
TrEMBLD7LVH18e-42D7LVH1_ARALL; Uncharacterized protein
STRINGXP_010424216.11e-80(Camelina sativa)
STRINGXP_010424224.11e-80(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.12e-24NAC domain containing protein 64