PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g071680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 286aa    MW: 32958.5 Da    PI: 9.6581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g071680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05232254123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp+C+ +F ++  +  H+++H
  Csa15g071680.1 232 YTCPKCNGVFDTSQKFAAHMSSH 254
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0096232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224232259IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSSIPNNFNF LGDDTNNHSF FPIQMNHNSN MVRSMFISSD HTNHGNFFPS SPSFTSFHNS  60
HVSSSSFGYQ NSHVRNHIMS DNYFPVNNHS HLTRVSFTQT ITNRYTAIIP TNTLDNAQYG  120
IERVKRAMNS ESNIWNRTFS SPITFDKKCE ILNPKPLNVI YPRQDSAYSQ HLDMYSLSSK  180
HNHDQHILQD GRSLKKILQP INRFEKTTEK SDGSNQDDGR THSLPYEKYG PYTCPKCNGV  240
FDTSQKFAAH MSSHYKTETS EEREQRLRAK NKRKFCKLTY GVHGR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g071680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935482e-53AB493548.1 Arabidopsis thaliana At2g15740 gene for hypothetical protein, partial cds, clone: RAAt2g15740.
GenBankAC0062482e-53AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBankCP0026852e-53CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092544.10.0PREDICTED: uncharacterized protein LOC104747390
TrEMBLD7L4F81e-142D7L4F8_ARALL; Zinc finger family protein
STRINGXP_010489174.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-134C2H2-like zinc finger protein