PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g074240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 279aa    MW: 30055.8 Da    PI: 8.784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g074240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000786988221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C+ Cgk F +   L  H+r
  Csa15g074240.1 69 PCTECGKQFGSLKALFGHMR 88
                    5******************8 PP
2zf-C2H211.40.00099157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F ++  L  H  tH
  Csa15g074240.1 157 FECGGCKKVFGSHQALGGHRATH 179
                     89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0766895IPR007087Zinc finger, C2H2
SMARTSM003550.0176890IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-106892IPR007087Zinc finger, C2H2
SuperFamilySSF576675.18E-86990No hitNo description
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-47090IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.18E-8152179No hitNo description
PfamPF139125.6E-8156181IPR007087Zinc finger, C2H2
SMARTSM003552.4157179IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764157184IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SuperFamilySSF576676.88E-5217244No hitNo description
SMARTSM003550.3218240IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-12218242IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058218245IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSNSSNSDPN FDIPFASSDV PLPSYNQKPR RKRTKLTNNE PGSSSSPTPR PNPVKKPLDS  60
DAPPQITRPC TECGKQFGSL KALFGHMRCH PERQWRGIIP PPDHKRGTNA TAASSSSNLN  120
VVLNKSEEED HNIASCLLLL AKRPVVLSSS SGVEGRFECG GCKKVFGSHQ ALGGHRATHK  180
DVKGCFAASN STEDPSPPQE IVGQDKGKSV KLVSGMNHRC HICLRVFSSG QALGGHMRCH  240
WEKDQEEHQV RAIDLNVPAA TSPPDTSIGC SLDLRLGL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g074240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071271e-115AC007127.7 Arabidopsis thaliana chromosome 2 clone T23A1 map mi398, complete sequence.
GenBankCP0026851e-115CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ0565331e-115DQ056533.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At2g17180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467471.10.0PREDICTED: zinc finger protein ZAT2-like
SwissprotQ9SIJ01e-134ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLR0GB191e-151R0GB19_9BRAS; Uncharacterized protein
STRINGXP_010467471.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-135C2H2-like zinc finger protein