PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g076190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 248aa    MW: 28395 Da    PI: 9.0986
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g076190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.84.7e-08125151430
                     XCHHHCHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeiee 30 
                     ++r +r++kNRe+A rsR+RK+++ e+
  Csa15g076190.1 125 DRRHKRMIKNRESAARSRARKQERKEN 151
                     799********************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-6119198No hitNo description
SMARTSM003381.5E-4122217IPR004827Basic-leucine zipper domain
PfamPF077165.9E-5126158IPR004827Basic-leucine zipper domain
CDDcd147075.88E-20126201No hitNo description
SuperFamilySSF579591.32E-5126158No hitNo description
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEEVWKEFNL GSLHYHRQVN IGHEPMLKNQ NPNNSIFQDF LNMPLNNQQP PQPPSSCSIV  60
TALYGSPLPL PPPATVLSLN SGVGFKFLDN TDSLLASNPN SFEESASFGC FAKKRGQVFD  120
ESRGDRRHKR MIKNRESAAR SRARKQERKE NTKSNVKFTV PLYKKVCLSF FQAYTNELEL  180
EIAHLQTENA RLERQNEQAY TNELELEIAH LQTENARLER QYEQLKMAEA TQHQVKKTLQ  240
RSSTAPF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g076190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1771551e-145GQ177155.1 Arabidopsis thaliana ecotype Wt-5 FDP gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467572.11e-133PREDICTED: bZIP transcription factor 27-like
SwissprotQ7PCC61e-102FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A178VTS71e-100A0A178VTS7_ARATH; FDP
STRINGXP_010467572.11e-132(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.23e-99basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]