PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g078130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 322aa    MW: 37042.3 Da    PI: 8.717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g078130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05242264123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp+C+  F ++  +  H+++H
  Csa15g078130.1 242 YTCPKCNGIFDTSQKFAAHMSSH 264
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSSIPNRFNI YGDGHREFCP IDMDHNSRMA RSMFITSDCS NHGDLFSSSP SLSIYQNSHV  60
SSSYFGVNNS HMTYHMMRRN IDFVSSADYL PMADNSRLTR VSFTQTITNK YTSIVPTNTL  120
DTFQYGIERV KQGMDSRTNI WNPAFRSPNF LDKHCKILNP KPLSVIFPCQ DYAYRQQADM  180
FSSPSRHNYD QNNLQGGRPL KKIFKPTMVF EETTDDRSFE ENKKSDDDGR THSLPYEKYG  240
PYTCPKCNGI FDTSQKFAAH MSSHYKTETD KERAQRFRAR NKRKYGKLNL EVHGESQKIN  300
PEDGVNSGGR SDDKIVKEEL L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g078130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467668.20.0PREDICTED: uncharacterized protein LOC104747690
TrEMBLD7L0761e-147D7L076_ARALL; Uncharacterized protein
STRINGXP_010467668.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-136C2H2-like zinc finger protein