PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g079180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 502aa    MW: 55947.5 Da    PI: 4.9304
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g079180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.42.7e-931255002374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ve L++++++v+s++l+laq +L+rl+++ +sp+g+p++R+a+yf+eAL + +++      +  + + +s+++ ++++ a k fs vsPi+ fsh
  Csa15g079180.1 125 VEDLIRVVNCVDSDELQLAQVILSRLNQRlRSPTGRPLERAAFYFKEALGSLITG-----TNRNQNRLSSWSDIVQKIRAIKEFSGVSPIPLFSH 214
                     689*************************99*************************.....6777888999999********************** PP

            GRAS  96 ltaNqaIleavege............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                     +taNqaIl+++  +               H++Df+i+ G+Q+++L++++a+++ +g   lR+T+v+ +  + + e++ ++e+La+fA+ l+++f+
  Csa15g079180.1 215 FTANQAILDSLTWQqqqhqsssssspPFAHVVDFEIGFGGQYASLMREIAEKSvNGIRFLRVTAVVTE--DYAVETRLVKENLAQFAADLEIRFQ 307
                     *********99765444444444433345************************9999**********5..5999********************* PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalf 268
                     +++++++++e l+++++r+ +gE ++V ++  ++r l       + ++ +++ ++++sP+vvv+v++e    ++++++sF ++f++ le+y+++f
  Csa15g079180.1 308 IEFVLMRTFEVLSFKSIRFVEGERTVVLISPVIFRRL-------NGISGFVNDLRRVSPEVVVFVDSEgwtgISRGAGSFQREFVSGLEFYTTVF 395
                     ************************************9.......33567*******************7766677899***************** PP

            GRAS 269 dsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                     +sl+a ++       ++ +E+++l+++i ++v ++ ++   r e++++Wre++ +aG++ vpls+++  qa++l++k +++g++v +++g+l+l+
  Csa15g079180.1 396 ESLDAAVAGGGgdLVKKIIEAFVLRPKIASAVEAAADK---RGEEMMTWREAFCAAGMRMVPLSQFVDFQAECLVEKAQVRGFHVAKRQGELLLC 487
                     ***999987665588999****************9999...889999************************************************ PP

            GRAS 362 WkdrpLvsvSaWr 374
                     W++rpLv++S+Wr
  Csa15g079180.1 488 WHERPLVATSVWR 500
                     ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.14198480IPR005202Transcription factor GRAS
PfamPF035149.4E-91125500IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MRVPASSDTT SNSNLVCFNE PTSVLDLRRS PSPSTAEEKP LLVSDQFPLD DDDHVMRSMD  60
WDSIMKELDL DDDNLKPNFP SSPHFAATAV DPPLLPIFPD QLHPPEFPGH GYGFNNEGGG  120
GLDFVEDLIR VVNCVDSDEL QLAQVILSRL NQRLRSPTGR PLERAAFYFK EALGSLITGT  180
NRNQNRLSSW SDIVQKIRAI KEFSGVSPIP LFSHFTANQA ILDSLTWQQQ QHQSSSSSSP  240
PFAHVVDFEI GFGGQYASLM REIAEKSVNG IRFLRVTAVV TEDYAVETRL VKENLAQFAA  300
DLEIRFQIEF VLMRTFEVLS FKSIRFVEGE RTVVLISPVI FRRLNGISGF VNDLRRVSPE  360
VVVFVDSEGW TGISRGAGSF QREFVSGLEF YTTVFESLDA AVAGGGGDLV KKIIEAFVLR  420
PKIASAVEAA ADKRGEEMMT WREAFCAAGM RMVPLSQFVD FQAECLVEKA QVRGFHVAKR  480
QGELLLCWHE RPLVATSVWR F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-1715950037375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g079180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467682.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0HL020.0R0HL02_9BRAS; Uncharacterized protein
STRINGXP_010467682.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]