PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16204s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 92aa MW: 10568.3 Da PI: 10.8257

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16204s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ Csa16204s010.1 68 FACRRCGKAFAVKGDWRTHEKNC 90 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.1E-6	54	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.41E-7	54	88	No hit	No description
PROSITE profile	PS50157	8.767	68	88	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MHMWGHGSQY RKGPESLRGT QPTGMLRLPC FCCAPGCKNN IDHPRAKPLK DFRTLQTHYK 60 RKHGSRPFAC RRCGKAFAVK GDWRTHEKNC GK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16204s010.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006085	1e-119	AC006085.1 Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete sequence.
GenBank	AJ311810	1e-119	AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
GenBank	CP002684	1e-119	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481105.1	2e-63	PREDICTED: zinc finger protein WIP5
Swissprot	Q8W031	5e-63	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A0D3CG62	3e-62	A0A0D3CG62_BRAOL; Uncharacterized protein
TrEMBL	D7KHP2	5e-62	D7KHP2_ARALL; Zinc finger protein
TrEMBL	R0IQE2	6e-62	R0IQE2_9BRAS; Uncharacterized protein
STRING	Cagra.2093s0011.1.p	8e-63	(Capsella grandiflora)
STRING	Bo5g081360.1	5e-63	(Brassica oleracea)
STRING	XP_010481105.1	7e-63	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	2e-65	WIP domain protein 5

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]