PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16433s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 103aa    MW: 11563.3 Da    PI: 10.6075
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16433s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57383.43.3e-261861698
          DUF573 16 LqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWgs 98
                    LqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++rLKkKf + vk+     k+++e++f+k+ ++k+fel++kiWgs
  Csa16433s010.1  1 LQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQRLKKKFGNTVKNaakkGKREDEVKFAKDIERKAFELARKIWGS 86
                    9***********.9************************************999888766688999********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.6E-21185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
LQGVLDFTST KGDPYEDSDA FCSYVKKLID FDATKSQIVT KLQRLKKKFG NTVKNAAKKG  60
KREDEVKFAK DIERKAFELA RKIWGSNGVM TSKSRKKIGG TTP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16433s010.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433671.13e-68PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB427e-51STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLR0F5W39e-56R0F5W3_9BRAS; Uncharacterized protein
STRINGXP_010433671.11e-67(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.13e-53DNA-binding storekeeper protein-related transcriptional regulator