PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16470s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 66aa    MW: 7434.6 Da    PI: 9.6855
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16470s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.65.9e-22756251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +++++s +++++  R+++i+ KA+ LS+LC+++v+vi+++++g l+++++
  Csa16470s010.1  7 SSSSYSLASTSLRSRLETIFRKAKQLSILCQVDVCVIYYGPDGDLKTFPN 56
                    799*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0081557IPR002100Transcription factor, MADS-box
PfamPF003195.6E-121654IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.8531658IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-111758IPR002100Transcription factor, MADS-box
CDDcd001201.13E-112155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MRLPSSSSSS YSLASTSLRS RLETIFRKAK QLSILCQVDV CVIYYGPDGD LKTFPNDKEK  60
VRNMAM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16470s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480551.13e-41PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-19AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLQ9SUT64e-19Q9SUT6_ARATH; AGAMOUS-like 52
STRINGXP_010480551.11e-40(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11250.13e-20AGAMOUS-like 52
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]