PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16628s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 60aa    MW: 6613.59 Da    PI: 4.6986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16628s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.96.4e-13156319373
            GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++ea F+ v+++e+a++++k++l++++ ++g++ e++++slvl+Wk++++v++++W
  Csa16628s010.1   1 MREAEFGGVRVKEEAVADVKAMLEEHAvGWGMKKEDDDNSLVLTWKGHSVVFATVW 56 
                     899***************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.1E-10156IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MREAEFGGVR VKEEAVADVK AMLEEHAVGW GMKKEDDDNS LVLTWKGHSV VFATVWIPI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16628s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266232e-62AK226623.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-29-K13.
GenBankAL1329782e-62AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0125532e-62BT012553.1 Arabidopsis thaliana At3g49950 gene, complete cds.
GenBankCP0026862e-62CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503664.15e-35PREDICTED: scarecrow-like protein 32
RefseqXP_010515361.25e-35PREDICTED: scarecrow-like protein 32
SwissprotQ9SN223e-34SCL32_ARATH; Scarecrow-like protein 32
TrEMBLR0FNR74e-32R0FNR7_9BRAS; Uncharacterized protein
STRINGXP_010503664.12e-34(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2741133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-36GRAS family protein