PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16998s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 73aa    MW: 8888.92 Da    PI: 10.9386
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16998s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.95.4e-142673552
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
                    +++rr+++NRe+ArrsR RK+  ++eL   v  L  eN++L ++l++l
  Csa16998s010.1 26 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNL 73
                    68******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-42273IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7142473IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-132672No hitNo description
PfamPF001703.7E-122673IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-112673No hitNo description
CDDcd147021.66E-122773No hitNo description
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MSLSSNNSTS DEAEEHQTNN NIINERKQRR MISNRESARR SRMRKQRHLD ELWSQVMWLR  60
IENHQLLDKL NNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16998s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168787e-93AB016878.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15.
GenBankAB4936377e-93AB493637.1 Arabidopsis thaliana At3g30530 mRNA for hypothetical protein, partial cds, clone: RAAt3g30530.
GenBankCP0026867e-93CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496052.15e-45PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC28e-30BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A384LDW02e-42A0A384LDW0_ARATH; BZIP42
TrEMBLQ9LW452e-42Q9LW45_ARATH; Basic leucine-zipper 42
STRINGXP_010496052.12e-44(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-47basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]