PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g002560.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 369aa MW: 40713.8 Da PI: 5.436

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g002560.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.1e-08	186	227	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+ R++iN+++ +L++llP+ K + ++L +A++Y+ +Lq Csa16g002560.1 186 ERKQRNDINKKLRTLQDLLPNY-----HKDDNESMLDEAINYMTNLQ 227 9******************7.....599************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.14E-7	173	231	No hit	No description
PROSITE profile	PS50888	12.284	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-10	180	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-12	184	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0019	185	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-6	186	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MELVFENGQI LAKGQRSNVS SIHNQRTKTI MDLYEAEYNE DFMKSIIIHD DVVGAIGDAQ 60 VVPQNHVVAA LPETTMLETN KHVDDSTLIE TLKSSSSKRV MVDYDNRKKI KFLPPDEQSV 120 VAERTVGSEF DASSSAGFTE DSEASTYLSS SLDDETDDAR PRRVPARTRK ALVKRKRNAE 180 AYDSPERKQR NDINKKLRTL QDLLPNYHKD DNESMLDEAI NYMTNLQLQV QGLQMMTMGN 240 RFVTPSMMLP LGSHYSQMSV AMGMGMQMGA SQFRPAPVLG AGLPGINNSA NTLTFLNHPG 300 LMPMQNSAPP FTTTEQCSPQ SVPPSCATFP NQISNPTFLS NSDGATPYTR NQGPLTDGGI 360 LSDKKSVNP

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MELVFENGQI LAKGQRSNVS SIHNQRTKTI MDLYEAEYNE DFMKSIIIHD DVVGAIGDAQ  60
VVPQNHVVAA LPETTMLETN KHVDDSTLIE TLKSSSSKRV MVDYDNRKKI KFLPPDEQSV  120
VAERTVGSEF DASSSAGFTE DSEASTYLSS SLDDETDDAR PRRVPARTRK ALVKRKRNAE  180
AYDSPERKQR NDINKKLRTL QDLLPNYHKD DNESMLDEAI NYMTNLQLQV QGLQMMTMGN  240
RFVTPSMMLP LGSHYSQMSV AMGMGMQMGA SQFRPAPVLG AGLPGINNSA NTLTFLNHPG  300
LMPMQNSAPP FTTTEQCSPQ SVPPSCATFP NQISNPTFLS NSDGATPYTR NQGPLTDGGI  360
LSDKKSVNP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g002560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019093081.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF6-like
Swissprot	Q8L5W7	0.0	PIF6_ARATH; Transcription factor PIF6
TrEMBL	D7LSU3	0.0	D7LSU3_ARALL; Uncharacterized protein
STRING	Bostr.13158s0214.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13423	14	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62090.1	1e-171	phytochrome interacting factor 3-like 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Adams E,Diaz C,Hong JP,Shin R 14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs. Int J Mol Sci, 2014. 15(12): p. 22801-14 [PMID:25501334] Galvão VC,Collani S,Horrer D,Schmid M Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana. Plant J., 2015. 84(5): p. 949-62 [PMID:26466761] Gomez EJ,Gerhardt K,Judd J,Tabor JJ,Suh J Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery. ACS Nano, 2016. 10(1): p. 225-37 [PMID:26618393] Ochoa-Fernandez R, et al. Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression. Methods Mol. Biol., 2016. 1408: p. 125-39 [PMID:26965120] Gangl R,Tenhaken R Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark. Front Plant Sci, 2016. 7: p. 1115 [PMID:27507985] Paik I,Kathare PK,Kim JI,Huq E Expanding Roles of PIFs in Signal Integration from Multiple Processes. Mol Plant, 2017. 10(8): p. 1035-1046 [PMID:28711729]