PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g003720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 323aa    MW: 36597.6 Da    PI: 4.7042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g003720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19103154156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++y+GVr++k +g+++AeIrdps+   r+r++lg+f taeeAa a+++a+ +++g+
  Csa16g003720.1 103 KKYRGVRQRK-WGKFAAEIRDPSS---RTRVWLGTFVTAEEAAVAYDRAAIQMRGH 154
                     59*******9.**********965...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.51E-30103160No hitNo description
PROSITE profilePS5103221.97104161IPR001471AP2/ERF domain
PfamPF008479.8E-13104154IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21104161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-30104160IPR001471AP2/ERF domain
SMARTSM003802.9E-36104167IPR001471AP2/ERF domain
PRINTSPR003675.0E-10105116IPR001471AP2/ERF domain
PRINTSPR003675.0E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MERRTRRVKF SEHRTVTTVV AKQSEDSPRL VRIAVTDPFA TDSSSGEDED NVTVKRYVEE  60
IRFCKGESSS SSAAFAVTTA RKAKLKAEKA VVDDVSSSSV KPKKYRGVRQ RKWGKFAAEI  120
RDPSSRTRVW LGTFVTAEEA AVAYDRAAIQ MRGHNALTNF LTPPPSPPPP KPPTPPIDLD  180
TVYVCDSGKD SRQTLHSPTS VLRFNANEET EYRTEHEIEI EPIELSPTAL VKSEPWFPDP  240
FPLPDLSLAD DYLWDSETAP DLLFLDDEEL KIQSPLLPLN TEYWKKEGNE ESEDFSFRLI  300
EEDFESSSWD VDNFFDHHHS RD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22101160262ATERF1
3gcc_A4e-22101160262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g003720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469106.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3741e-124CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLR0H5A31e-145R0H5A3_9BRAS; Uncharacterized protein
STRINGXP_010469106.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.15e-89cytokinin response factor 6