PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g004270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 620aa    MW: 67288.2 Da    PI: 4.6063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g004270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.14.6e-9826261815374
            GRAS  15 gdlelaqalLarlselaspdgd........pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                     ++  laq +Larl+++ ++++d        p++R+a+y+teAL++ l++       + +ps ++++n + ++aa+++fse sP+l+f ++taNq+
  Csa16g004270.1 262 NNPILAQGILARLNHNLNKNDDdtnnnpkpPLHRAASYLTEALHSLLQD-------SSSPSLSPPQNLIFRIAAYRAFSESSPFLQFVNFTANQT 349
                     45569***********77666558999999******************9.......55677777789**************************** PP

            GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     Ile++eg++r+Hi+Dfdi++G+QW++L+q+La +R+  ++ppsl+iT+++sp+++ ++ el+ t+e+L++fA+e+gv+f +++l ++ l + + +
  Csa16g004270.1 350 ILESLEGSDRIHIVDFDIGYGGQWASLIQELAgKRNrsSSPPSLKITAFASPSTVsDEFELRFTEENLRNFAAETGVSFGIELLNMEILLNPTCW 444
                     ********************************85556699*************9999***************************88888888888 PP

            GRAS 193 eLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseeri 283
                      L++ +   +Ea+ Vnl ++             + + +L+++k++sP+vvv++++ +d+ n+++F +++++al+yy++l++sl+++   ++e+ +
  Csa16g004270.1 445 PLSLFRsseKEAISVNLPISSVVSG--------YLPLILRFLKQISPNVVVCSDRSCDRnNDTPFPNGVINALQYYTTLLESLDSS---NAEAVT 528
                     8877766669999999999555444........5677**********************999*********************999...78999* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                      vEr++++++i+++++++ ++    +e+   Wr+ ++++GF+pv+ls+ a++qa++ll++ +++g+++e++     slvl+W++++Lv+vSaW+
  Csa16g004270.1 529 RVERFCVQPSIQKLLTNRYRW----MERTPPWRSLFGQCGFSPVTLSQAAETQAEYLLQRNPMRGFHLEKRqssLSSLVLCWQRKELVAVSAWK 618
                     *********************....99******************************************8822245678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.456222595IPR005202Transcription factor GRAS
PfamPF035141.6E-95262618IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MPLPFEQFQG KGVLGFLDSS SSSFSPEYKI WGPEKLHGRE VVEDLCFVVN NGGFSEPTSV  60
LDSVRSPSPF LSSSTTTLSS SHGGGGGGAA AADFSGADEK CDPMGFEDLD GVLSGGSPGQ  120
EESILRLIMS GGGGDVVDPG SEFVGFDTGS GSDPVIDNPN PLFGYGFPVH DATNPEILIN  180
PSPGFFSDPP SSPPAKRLNS GQPGSQHPQQ WGFPFSDPGH ESHDPFLTPP KLAGEDQSTL  240
IIDQLFSAAV ELIGRTTNGG DNNPILAQGI LARLNHNLNK NDDDTNNNPK PPLHRAASYL  300
TEALHSLLQD SSSPSLSPPQ NLIFRIAAYR AFSESSPFLQ FVNFTANQTI LESLEGSDRI  360
HIVDFDIGYG GQWASLIQEL AGKRNRSSSP PSLKITAFAS PSTVSDEFEL RFTEENLRNF  420
AAETGVSFGI ELLNMEILLN PTCWPLSLFR SSEKEAISVN LPISSVVSGY LPLILRFLKQ  480
ISPNVVVCSD RSCDRNNDTP FPNGVINALQ YYTTLLESLD SSNAEAVTRV ERFCVQPSIQ  540
KLLTNRYRWM ERTPPWRSLF GQCGFSPVTL SQAAETQAEY LLQRNPMRGF HLEKRQSSLS  600
SLVLCWQRKE LVAVSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2932961880375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g004270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1622950.0AL162295.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21.
GenBankAY0640620.0AY064062.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankAY0963720.0AY096372.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469159.10.0PREDICTED: scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLR0H1P50.0R0H1P5_9BRAS; Uncharacterized protein
STRINGXP_010469159.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]