PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g004310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 326aa    MW: 36846.9 Da    PI: 8.294
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g004310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-05426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC +C ksF +   L  H+r+H
  Csa16g004310.1  4 YKCRYCFKSFANGRALGGHMRSH 26
                    9*********************9 PP
2zf-C2H2163.4e-05206228123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk+F++   L  H  +H
  Csa16g004310.1 206 YKCETCGKVFKSYQALGGHRASH 228
                     9************9999998887 PP
3zf-C2H210.70.0016261283123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F +   L  H r+H
  Csa16g004310.1 261 HECPICFRVFASGQALGGHKRSH 283
                     79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.64E-10326No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-6428IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.637436IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4191230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.64E-10201228No hitNo description
PfamPF139121.9E-11205230IPR007087Zinc finger, C2H2
SMARTSM003550.0071206228IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427206233IPR007087Zinc finger, C2H2
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
SMARTSM003550.24261283IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-10261283IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037261283IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MENYKCRYCF KSFANGRALG GHMRSHMPSL HVDEERPSQL SYETTESDVS SSSSKEKRNG  60
KKNDDPKFAS TSSLLLLEDG DGDDESETES SRNVINLTRK RSKRTRKLDS FATKKKKVKT  120
SQLGYKSDPE PPHSSASDTT TEEDLAFCLM MLSRDKWKKN KSSNNSKEVV EEIETEEEEE  180
EELEGYNNRL SKMNRTTRTT TTKGRYKCET CGKVFKSYQA LGGHRASHKK NRVSNKTEQQ  240
RSETEHDNVV VVVAAAEKRI HECPICFRVF ASGQALGGHK RSHGIGNLSV NHHQAHHQIE  300
SVKQRMIDLN LPAPTEEDEV SVVFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198116RKRSKRTRKLDSFATKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g004310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469165.10.0PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2021e-151ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLR0H5511e-175R0H551_9BRAS; Uncharacterized protein
STRINGXP_010469165.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-124C2H2-like zinc finger protein