PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g004420.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 272aa MW: 29947.6 Da PI: 4.4795

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g004420.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.1	9.4e-18	70	119	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a ++++g Csa16g004420.1 70 SYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKG 119 6***998.******843...6******************9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	6.9E-34	70	133	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-20	70	127	IPR016177	DNA-binding domain
Pfam	PF00847	3.4E-12	70	119	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.5E-30	70	128	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.827	70	127	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-10	71	82	IPR001471	AP2/ERF domain
CDD	cd00018	3.33E-31	71	129	No hit	No description
PRINTS	PR00367	2.2E-10	93	109	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEKQINLESS ATTHHHDNNA SVTTISSSSA VTSSSESWTT SSKRSLVQDN DAGGKRRKSN 60 VSDDNKNPTS YRGVRMRSWG KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVASLAIKGN 120 SGYLNFPELS HLLPRPVSCS PKDIQAAATK AAEATTWQLE PAIDDGKLPE PEADDELSHS 180 ELLSTITTTT ADQSSTSSSF VFSSDTSETS STDKESNEEE TVFDLPDLFT DGLMNRNDAF 240 CLCNGTFTWQ LCGEEDVGFR FEEEPFIWQN D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-15	71	127	15	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g004420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138646	1e-151	AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBank	AY560848	1e-151	AY560848.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g60490) mRNA, complete cds.
GenBank	BT029458	1e-151	BT029458.1 Arabidopsis thaliana At3g60490 mRNA, complete cds.
GenBank	CP002686	1e-151	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469178.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF035-like
Swissprot	Q9M210	1e-118	ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBL	D7LRR0	1e-125	D7LRR0_ARALL; Uncharacterized protein
STRING	XP_010469178.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60490.1	4e-98	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]