PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g004460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 310aa    MW: 35201.5 Da    PI: 7.1681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g004460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.2e-141762146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  ++Rt+k+c++rw +
   Csa16g004460.1 17 KGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLHRTGKSCRLRWVN 62
                     79*************************888779***********87 PP
2Myb_DNA-binding37.26.8e-1273112344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++++E+   +++   +G++ W++Ia +++ gRt++++k++w
   Csa16g004460.1  73 KFSADEERVVIELQSDFGNK-WARIATYLP-GRTDNDVKNFW 112
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21965IPR009057Homeodomain-like
PROSITE profilePS5129422.1551268IPR017930Myb domain
SuperFamilySSF466891.25E-2715112IPR009057Homeodomain-like
SMARTSM007173.1E-121666IPR001005SANT/Myb domain
CDDcd001671.05E-111964No hitNo description
PfamPF139215.6E-122070No hitNo description
Gene3DG3DSA:1.10.10.605.2E-1766118IPR009057Homeodomain-like
PROSITE profilePS5129417.13669120IPR017930Myb domain
SMARTSM007174.5E-1170118IPR001005SANT/Myb domain
PfamPF002491.8E-1073112IPR001005SANT/Myb domain
CDDcd001674.64E-973112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRKMEANNNN KKEEIKKGPW KAEEDEVLIN HVKRYGPRDW SSIRSKGLLH RTGKSCRLRW  60
VNKLRPNLKN GCKFSADEER VVIELQSDFG NKWARIATYL PGRTDNDVKN FWSSRQKRLA  120
RILHNSSSDA STSKSSSSSS HRCKGKHVKP IRQSCNPTQG FSLVEEEEIT VSSSSSLMKV  180
PYSSSDQVDD KALRLPDLGI KFEHQPFTFG TDLVIAEFSD SPNDADQQAL IPFSPESREL  240
LARLDDPFYY DILGPADSSE PLFALPQPFF EPSPAPRRCR HVSKDEEPDV FLDDFPADMF  300
DQVDPIRTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271411824126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g004460.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:25057814}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4694680.0AF469468.1 Arabidopsis thaliana putative transcription factor (MYB125) mRNA, complete cds.
GenBankHM7765210.0HM776521.1 Arabidopsis thaliana duo pollen 1 (DUO1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469183.10.0PREDICTED: myb-related protein 305-like
SwissprotA0A178VEK70.0DUO1_ARATH; Transcription factor DUO1
TrEMBLD7LRQ60.0D7LRQ6_ARALL; Uncharacterized protein
STRINGXP_010469183.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65512842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-166MYB family protein
Publications ? help Back to Top
  1. Zheng B,He H,Zheng Y,Wu W,McCormick S
    An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana.
    PLoS Genet., 2014. 10(7): p. e1004421
    [PMID:25057814]
  2. Peters B, et al.
    A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter.
    Plant Physiol., 2017. 173(1): p. 280-293
    [PMID:27624837]
  3. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]