PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g005850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 647aa    MW: 71941.9 Da    PI: 10.1149
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g005850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-093586247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                     + W t+E++ l +avk++   +W+++a+ ++      +  ++ +c++r+q++
   Csa16g005850.1 35 QVWGTWEELVLTCAVKRHAFTDWDSVAKDVQsrsrnsLIASAINCRLRYQDL 86
                     68*****************************665555555666677777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.69E-62987IPR009057Homeodomain-like
PfamPF002492.3E-73586IPR001005SANT/Myb domain
CDDcd001675.49E-53787No hitNo description
SMARTSM002975.5E-20139386IPR001487Bromodomain
SuperFamilySSF473706.28E-18280385IPR001487Bromodomain
CDDcd043693.03E-12284381No hitNo description
Gene3DG3DSA:1.20.920.108.4E-18284385IPR001487Bromodomain
PfamPF004396.5E-12295369IPR001487Bromodomain
PROSITE profilePS5001413.506296367IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MNDDDDTNNI NSCSGFDNNR IGDGDDNCNI NQISQVWGTW EELVLTCAVK RHAFTDWDSV  60
AKDVQSRSRN SLIASAINCR LRYQDLKRRF EDSVDGGEGN REAAVVAAAA EDDEVGEIPW  120
LDQLRSLHVA ELRREVQRRD DSILSLQLKV KKLEEEEKDG DDGDNKPDLG NDETKPAKLN  180
RETTESDRDD NRSMNESNST ASVDKVADHD GDKRVEAYSD PDPVNKAAAP KEEEEEKTVS  240
KRSEMSNSGE LDESGTSTGH GKRKGQKKYR SGGGGGEIKS AGYKSQPLID TIKLIRSHPR  300
GSVFESRLRS QETKDYKRVI RQHLDIKTIE KKLEKGSYLS SSLSFYRDLK LLFTNAIVFF  360
PPSSSESLAA QELRSLVSNE IKKRTGILGH ELRSLVSNEI KKRTGILGHG VIKSEAGSSV  420
SRQKSPVLPL VACKKNSSSS KKTSPSSSLK EKYEKKSQEV SEEKTVTTTT SARSSRRTTK  480
EIAVVAKDTK IGRAKINNNK QKVTKTDSSS DDDDEKEETP KTEKKTIAIP SDKKKSVADF  540
LKRIKKNSPQ KGKETASKNQ KKSDGNIKKE NDPPKKNDGN VKKENSKAKP RELRSNSTGK  600
KKAEVENNNS KSSSKRKQPK ETAEPTGKRG RESGKDSKQP KKRTRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g005850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563930.0AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005190.0BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093179.10.0PREDICTED: bromodomain-containing protein bet-1-like isoform X2
TrEMBLD7LWL10.0D7LWL1_ARALL; Uncharacterized protein
STRINGXP_010469233.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein