PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g005930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 905aa    MW: 101114 Da    PI: 6.3469
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g005930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.11.9e-41117193278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqve+C adl++ak+yhrrhkvCe+hska+++lv  ++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Csa16g005930.1 117 CQVENCGADLTKAKDYHRRHKVCEMHSKATSALVGSIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANP 193
                     **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32113178IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077114191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-38116196IPR004333Transcription factor, SBP-box
PfamPF031106.3E-30117190IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.7E-6694797IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-7695796IPR020683Ankyrin repeat-containing domain
CDDcd002048.07E-8698796No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MEARRTQGGE EEGHSLYGFS GKTSVAEWDL NDWKWDGHLF VARQLNHGSS NTSSACSDEA  60
TVVDIMDNMN KRRAVTVIPM DDDDAPKLTL NLGGCGSGNF AKKTKLGGAL QTRAISCQVE  120
NCGADLTKAK DYHRRHKVCE MHSKATSALV GSIMQRFCQQ CSRFHVLEEF DEGKRSCRRR  180
LAGHNKRRRK ANPDTLGDGT PTSDGQTSNY LLITLLKILS NIHLNQSDQT GDQLLSHLLK  240
SLVSQPGEHV GKDLVGLMQG GGGLEASQAL LSLEQAHRED IKHHSVNVLE TPLQEVYVNG  300
SQERAVLDKS QKQVKMNAFD LNDVYIDSDD TTDIERSSPP PTNPATSSLD YHQDSRQSSP  360
PQTSRNSDSA SDQSPSSSSR DAPSRTDRIV FKLFGKVPND FPVALRGQIL DWLAHTPTDM  420
ESYIRPGCIV LTVYLRQDEA SWEELCCDLS FSLRRLLDLS HDPLWTDGWI YLRVQNQFAF  480
AFNGQVVLDT SLPLRSHDNS QIITVRPLAV TRKAQFTVKG INLHRPGTRV LCAVEGTYLV  540
QEETQGVTEE SDDLKEQNKP DSVKFSCEIP IGSGRGFMEI EDQDGLSSSF FPFIVSEDED  600
VCSEIQRLES TLEFTGTDSP MQAMYFIHEI GWLLHKSELS SRFAESDHLF PLIRFKFLIE  660
FSMDREWCAV IKKLLNILFE EGTVDLSPDA ALSELCLLHR AVRKNSKLMV EMLLRFIPKK  720
TNLALSGLFR PDAAGPSGLT PLHIAAGKDG SEDVLDALTD DPGMIGIQAW KTSRDNTGFT  780
PEDYARLRGH FSYIHLVQRK LNRKPTAEEH VVVNIPESFN IDHKQEKRSL KDSSSLKINQ  840
CKLCDHKRVF VTRQHSSVAY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV FQPFRWELLA  900
YGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-31114171360squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00060PBMTransfer from AT3G60030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g005930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ1320960.0AJ132096.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 12.
GenBankBT0038170.0BT003817.1 Arabidopsis thaliana clone C105276 putative squamosa promoter binding protein 12 (At3g60030) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469241.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLD7LWK10.0D7LWK1_ARALL; Uncharacterized protein
STRINGXP_010469241.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]