PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g007690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 272aa MW: 29836.9 Da PI: 10.0307

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g007690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.7	3.6e-29	100	193	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ Csa16g007690.1 100 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQLEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVMRNDV 193 8********************97778888888****************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-13	100	190	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-5	100	165	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	100	166	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
SLSNEIKSFL PLVHFALSLS LSISGAKAVT VCFRYNAVKS KPVSKRRKQK KRGREYSVCM 60 ALEQQLGLGV SAVDGGGGEN SSAPSNDGGD DGVKTARLPR WTRQEILVLI QGKRVAENRV 120 RRGRAAGMAL GSGQLEPKWA SVSSYCRRHG VNRGPVQCRK RWSNLAGDYK KIKEWESQVK 180 EETESYWVMR NDVRREKKLP GFFDKEVYDI VDGGVIPSTA VPTLALGLAP ASASEEGLLP 240 DFDRLNKLNS TPVPKSVSDK EKQEACEADQ E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g007690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002332	0.0	AC002332.3 Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete sequence.
GenBank	AY065364	0.0	AY065364.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469456.1	1e-154	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	1e-128	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	R0HQI3	1e-138	R0HQI3_9BRAS; Uncharacterized protein
STRING	XP_010469456.1	1e-154	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-123	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]