PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g012020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 392aa MW: 43789.5 Da PI: 6.251

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g012020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	202	260	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ Csa16g012020.1 202 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 260 9********************************************99998887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-15	198	262	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	200	263	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.6E-9	202	254	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.04E-10	202	253	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-11	202	256	No hit	No description
CDD	cd14703	9.39E-23	203	252	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDKEKSPAPC GGGLPPPSPS GRCSAFSDSG PSGHGSDANR MSHDISRMLD NPPKKIGHRR 60 AHSEILTLPD DLSFDSDLGV VGNAADGPSF SDETDEDLLS MYLDMDKFNS SATSSAQVGE 120 PSGGTPWKNE SMMQTGSASN PQNTLNSFGE RPRIRHQHSQ SMDGSMNINE MLMSGNEDDS 180 VIDAKKSMSA TKLAELALID PKRAKRIWAN RQSAARSKER KTRYIFELER KVQTLQTEAT 240 TLSAQLTLLQ RDTNGLTVEN NELKLRLQTM EQQVHLQDEL NEALKEEIQH LKVLTGQVAP 300 SALNYGSFGS NQQFYSNNQS MQTILAAQQF QQLQIHSQKQ QQQQQQQQQQ QQQQQYQFQQ 360 QQMQQLMQQR IQQQEQQNGV RIKPSQAQKE S*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDKEKSPAPC GGGLPPPSPS GRCSAFSDSG PSGHGSDANR MSHDISRMLD NPPKKIGHRR  60
AHSEILTLPD DLSFDSDLGV VGNAADGPSF SDETDEDLLS MYLDMDKFNS SATSSAQVGE  120
PSGGTPWKNE SMMQTGSASN PQNTLNSFGE RPRIRHQHSQ SMDGSMNINE MLMSGNEDDS  180
VIDAKKSMSA TKLAELALID PKRAKRIWAN RQSAARSKER KTRYIFELER KVQTLQTEAT  240
TLSAQLTLLQ RDTNGLTVEN NELKLRLQTM EQQVHLQDEL NEALKEEIQH LKVLTGQVAP  300
SALNYGSFGS NQQFYSNNQS MQTILAAQQF QQLQIHSQKQ QQQQQQQQQQ QQQQQYQFQQ  360
QQMQQLMQQR IQQQEQQNGV RIKPSQAQKE S*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g012020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317087	0.0	AK317087.1 Arabidopsis thaliana AT2G31370 mRNA, complete cds, clone: RAFL21-87-G20.
GenBank	AY057534	0.0	AY057534.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds.
GenBank	AY113058	0.0	AY113058.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469701.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_010469702.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	0.0	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	D7LDK3	0.0	D7LDK3_ARALL; Uncharacterized protein
STRING	XP_010469701.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]