PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g015870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 615aa    MW: 70704.7 Da    PI: 7.6909
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g015870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.56.4e-1082336112373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsets..eknsseelaalklfsevsPilkf 93 
                     ++lL+ cA+a+s+gd++ a  lL ++++++sp gd+ qRla++f++AL+arl++s+ ++ ++  ++ +t   +++ +++l+a++++   sP++++
  Csa16g015870.1 233 RTLLTLCAQAISTGDKTTALDLLMQIRQQSSPIGDAGQRLAHCFANALEARLQGSTGSMIQTYyNAITTCslKETATDTLKAYRVYLSSSPFVTL 327
                     6799*************************************************977666555522222220134599****************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++   ++Il+a   ++ +Hi+Df+i +G+QWp ++q ++sR++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+++++ +++
  Csa16g015870.1 328 MYFFSFRMILDASIDAKVLHIVDFGILYGFQWPMFIQYISSRKDAPRKLRITGIELPQRGfrPAERIEETGRRLAEYCKRFNVPFEYKAIAFQHW 422
                     **********************************************************99*********************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     +++++++L+++p+E+laV   l+l++l de++s e+ +rd+vLkl+++++P+v++++  + + n++ F  rf ea+++ysalfd+++++lpr++e
  Csa16g015870.1 423 DKIRIQDLDIRPNEVLAVTAGLRLKNLQDETGSEENcPRDAVLKLIRNMNPNVFIHSIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNE 517
                     ************************************99********************************************************* PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     eri  Ere+ gre++nv+ace+a+r+er et+++W+ r+ +aGF++ +++ + +++ +  l+k +  + + v+e+s++l+lgWk+r+L++ S+W
  Csa16g015870.1 518 ERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFRQKQVKPELVEKFREKLKKWGyHKDFVVDENSKWLLLGWKGRTLYASSCW 611
                     ****************************************************************99999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.385206591IPR005202Transcription factor GRAS
PfamPF035142.2E-105233611IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MMDPNFDANP SFLADPVEED QYTLLKYVSE ILMEESNGDY KQSMFYDSLA LRKTEEMLQQ  60
VITDSQNQSF SCDSIITTSS SSFAGRDAGG SIVESADLRI SPSVVKSMFS DADSALQFKK  120
GVEEASKFLP NSDHWLIKPE RCDLGLDPLR VKRSHEREVI DFEEVRNSKQ FATNVEDGKI  180
TELFDKVLLL DSECDPPTLL DSKIQEIQSN HKQGVKGKKK KKKKKKSQVV DFRTLLTLCA  240
QAISTGDKTT ALDLLMQIRQ QSSPIGDAGQ RLAHCFANAL EARLQGSTGS MIQTYYNAIT  300
TCSLKETATD TLKAYRVYLS SSPFVTLMYF FSFRMILDAS IDAKVLHIVD FGILYGFQWP  360
MFIQYISSRK DAPRKLRITG IELPQRGFRP AERIEETGRR LAEYCKRFNV PFEYKAIAFQ  420
HWDKIRIQDL DIRPNEVLAV TAGLRLKNLQ DETGSEENCP RDAVLKLIRN MNPNVFIHSI  480
VNGSFNAPFF ISRFKEAVYH YSALFDMFDS TLPRDNEERI RFEREFYGRE AMNVIACEEA  540
DRVERPETYR QWQVRMVRAG FRQKQVKPEL VEKFREKLKK WGYHKDFVVD ENSKWLLLGW  600
KGRTLYASSC WVPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-432326115374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225KKKKKKKKK
2219225KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g015870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470000.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010470001.10.0PREDICTED: scarecrow-like protein 34
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLR0FVU80.0R0FVU8_9BRAS; Uncharacterized protein
STRINGXP_010470000.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein