PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g016330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 291aa    MW: 33022.7 Da    PI: 5.8661
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g016330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF313.3e-101049241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +i nk  r+ tf +R++gi KK + L +LC+++v+ +i+ 
  Csa16g016330.1 10 FIYNKVIRKRTFNRRKEGIKKKLSDLKTLCNVDVCAVIYN 49
                    799********************************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.22E-17177IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-11160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.199149IPR002100Transcription factor, MADS-box
CDDcd002668.93E-20284No hitNo description
PfamPF003194.2E-121150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAKKKLNLNF IYNKVIRKRT FNRRKEGIKK KLSDLKTLCN VDVCAVIYNP FDSTPDVWPS  60
ESGVNSVIEK ALMVTEKKCE MLNHEAFLNQ FIEKVKKHED KLVEDNNETR LKEVMFRCLG  120
GNMKDLKMND KDHFDLCEFI DGYLKDLYHH KKVNLNQPNF EIGESSSMQM ARTATTANMT  180
TNSVYVDMAP TNVSSFMAPT DVSLFMAPTD VSSFMAPPTM AEVSFSSILN APFFNHFQPT  240
NELELIVSPN QTLGDMNSLS MTLSNHGADH VDFQISDNNQ EVYIPSVDQF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g016330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414491.21e-167PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A178VYD39e-93A0A178VYD3_ARATH; AGL46
TrEMBLF4IIT69e-93F4IIT6_ARATH; AGAMOUS-like 46
TrEMBLQ7XJ971e-92Q7XJ97_ARATH; Uncharacterized protein
STRINGXP_010513274.11e-160(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.11e-95AGAMOUS-like 46