PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g016620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 164aa    MW: 18620.6 Da    PI: 4.1146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g016620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-181296898
                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +  +s+ l +p ++ e+     + +kt +l+ + g+ W+v +  + +++++++++GW +Fv +n+Lk+g+f++F +dg   +++ v++f 
  Csa16g016620.1 12 LSQYSSDSLLIPVSYYEHLP--RPLPKTGILMGTGGKIWKVAM--KSRQEQVYFERGWANFVADNDLKDGEFLIFVFDG--YRRYEVSIFG 96
                    45667788********5554..4588999**************..999999*************************877..4445787775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.592598IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-225100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-215100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-18595No hitNo description
SMARTSM010198.5E-17798IPR003340B3 DNA binding domain
PfamPF023627.3E-15995IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
GDVLPRFFSV YLSQYSSDSL LIPVSYYEHL PRPLPKTGIL MGTGGKIWKV AMKSRQEQVY  60
FERGWANFVA DNDLKDGEFL IFVFDGYRRY EVSIFGHGGC KEIRAAVEVE EIFDGTESEN  120
NESSLESVRQ DEEEETIDAD AKSDTNYSPD TIENQQMDFG IIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-22610010104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g016620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093818.11e-118PREDICTED: B3 domain-containing protein At3g06220-like
SwissprotQ1PES71e-62Y3622_ARATH; B3 domain-containing protein At3g06220
SwissprotQ9M8K23e-62REM21_ARATH; B3 domain-containing protein REM21
TrEMBLR0H1D44e-68R0H1D4_9BRAS; Uncharacterized protein
STRINGXP_010470071.11e-118(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.14e-62B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]