PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g016840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 234aa    MW: 26047.1 Da    PI: 5.4264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g016840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-19162195134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C tt Tp+WR+gp+g+ktLCnaCG+++r+ +
  Csa16g016840.1 162 CTHCETTRTPQWREGPRGPKTLCNACGVRFRSGR 195
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.04E-14155218No hitNo description
SMARTSM004011.2E-15156206IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.281156192IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-15161193IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.07E-17161210No hitNo description
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
PfamPF003202.7E-17162195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSNGSWLPEE DLKVLEDNFF DTLVDDMDDF PLENIETADD DEEDRVAGFQ NLGSPLPLDV  60
LTSLYTQFTC KKQASSSDVS PTVDSSPPDV KVLKLIKSSS PVSVIENTNG SALSHNQNRI  120
QRLGAEMSQQ LVPDESESET YLSSENSAKK KRKKQKTPAP KCTHCETTRT PQWREGPRGP  180
KTLCNACGVR FRSGRLFPEY RPASSPTFIP TVHSNMHRKI VEMRRKGEGQ LDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g016840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470099.11e-174PREDICTED: putative GATA transcription factor 13
SwissprotQ9SKN65e-80GAT13_ARATH; Putative GATA transcription factor 13
TrEMBLR0FY421e-105R0FY42_9BRAS; Uncharacterized protein
STRINGXP_010470099.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.13e-71GATA transcription factor 13