PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g016980.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 421aa MW: 45360.8 Da PI: 8.604

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g016980.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Csa16g016980.1 115 YECKTCNRTFSSFQALGGHRASH 137 99**********99999998887 PP
2	zf-C2H2	11.8	0.00072	248	270	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Csa16g016980.1 248 YECKTCNRTFSSFQALGGHRASH 270 99**********99999998887 PP
3	zf-C2H2	12.7	0.00039	324	346	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Csa16g016980.1 324 HECSICGSEFTSGQALGGHMRRH 346 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.33E-5	114	142	No hit	No description
Pfam	PF13912	1.7E-12	114	139	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.063	115	137	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	115	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.55E-8	247	270	No hit	No description
Pfam	PF13912	1.7E-12	247	272	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.063	248	270	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	248	275	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	250	270	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.55E-8	319	346	No hit	No description
Pfam	PF13912	2.5E-11	323	347	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	324	346	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	324	351	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	326	346	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTTATTVTS TSSSAGGSGG RAVSDEYNSA 60 VSSPVTTTDC TQAEEDMAIC LIMLARGTVL PSPDLKNSRK VHQKISSEDS SFYVYECKTC 120 NRTFSSFQAL GGHRASHKKP RTLTEEKARS PLMQPKSSAS EEGQNSPFKG SGSALASQAS 180 NIIINKANKY NSAVSSPVTT TDCTQAEEDM AICLIMLARG TVLPSPDLKN SRKVHQKISS 240 EDSSFYVYEC KTCNRTFSSF QALGGHRASH KKPRTLTEEK ARSPLMQPKS SASEEGQNSP 300 FKGSGSALAS QASNIIINKA NKVHECSICG SEFTSGQALG GHMRRHRTAV PAVSPVAATA 360 EVSRNSTEEE IEISLSRSME QQRKYLPLDL NLPAPEDDLR ESKFQGIVFS ATPALIDCHY 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTTATTVTS TSSSAGGSGG RAVSDEYNSA  60
VSSPVTTTDC TQAEEDMAIC LIMLARGTVL PSPDLKNSRK VHQKISSEDS SFYVYECKTC  120
NRTFSSFQAL GGHRASHKKP RTLTEEKARS PLMQPKSSAS EEGQNSPFKG SGSALASQAS  180
NIIINKANKY NSAVSSPVTT TDCTQAEEDM AICLIMLARG TVLPSPDLKN SRKVHQKISS  240
EDSSFYVYEC KTCNRTFSSF QALGGHRASH KKPRTLTEEK ARSPLMQPKS SASEEGQNSP  300
FKGSGSALAS QASNIIINKA NKVHECSICG SEFTSGQALG GHMRRHRTAV PAVSPVAATA  360
EVSRNSTEEE IEISLSRSME QQRKYLPLDL NLPAPEDDLR ESKFQGIVFS ATPALIDCHY  420
*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g016980.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005851	0.0	AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBank	AC006202	0.0	AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBank	AK175493	0.0	AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
GenBank	AK229812	0.0	AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470129.1	1e-171	PREDICTED: zinc finger protein ZAT5-like isoform X1
Refseq	XP_019093457.1	1e-171	PREDICTED: zinc finger protein ZAT5-like isoform X2
Swissprot	Q681X4	1e-155	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A178VUQ3	1e-152	A0A178VUQ3_ARATH; Uncharacterized protein
STRING	XP_010470129.1	1e-170	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-145	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]