PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g018630.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 373aa MW: 42003.8 Da PI: 9.6694

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g018630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.9	9.1e-08	241	287	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i eLe+ v++L+ae ++ + el+ l++ l +e+ Csa16g018630.1 241 AQRSRVRKLQYISELERNVQTLQAEGSKVAAELDFLNQRNLILSMEN 287 89********************************9999887777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0058	230	289	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.26E-14	233	280	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.2E-5	241	282	No hit	No description
SuperFamily	SSF57959	1.13E-5	241	283	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYFEYIP SGLIGSRNSQ KLGDVKTHHQ 60 RTSSESHLVE ELPFWLDDLL NEPESPARKC GHRRSSSDSY AYLDVANATN ISLTLQNDFS 120 YRNTVSSRGM QELDRNKNAQ DAAFYPDANF LKQKSRQRDS LVASGARPSW LPFPRESGGG 180 KNMGSSYMSQ EATVLSERKN YAEPLSHDPN SKLYSSEENN SNPSPVTYEA DNTKRAKQQF 240 AQRSRVRKLQ YISELERNVQ TLQAEGSKVA AELDFLNQRN LILSMENKAL KQRLESIAQE 300 KLIKQLEQEV LEKEIGRLRA LYQQQQQTQK PSATRGRTTG KDLESQFSSL SLNTKDSNCR 360 HDSVSVMGQF HF*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYFEYIP SGLIGSRNSQ KLGDVKTHHQ  60
RTSSESHLVE ELPFWLDDLL NEPESPARKC GHRRSSSDSY AYLDVANATN ISLTLQNDFS  120
YRNTVSSRGM QELDRNKNAQ DAAFYPDANF LKQKSRQRDS LVASGARPSW LPFPRESGGG  180
KNMGSSYMSQ EATVLSERKN YAEPLSHDPN SKLYSSEENN SNPSPVTYEA DNTKRAKQQF  240
AQRSRVRKLQ YISELERNVQ TLQAEGSKVA AELDFLNQRN LILSMENKAL KQRLESIAQE  300
KLIKQLEQEV LEKEIGRLRA LYQQQQQTQK PSATRGRTTG KDLESQFSSL SLNTKDSNCR  360
HDSVSVMGQF HF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g018630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT003980	0.0	BT003980.1 Arabidopsis thaliana clone RAFL15-22-D03 (R20596) putative bZIP family transcription factor (At1g58110) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470287.1	0.0	PREDICTED: uncharacterized protein At4g06598
Swissprot	Q8W3M7	7e-63	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	D7KY87	0.0	D7KY87_ARALL; Predicted protein
STRING	XP_010470287.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	0.0	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]