PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g018750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 436aa    MW: 47746 Da    PI: 7.9774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g018750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.4e-077087826
                    GGGGTS--TTTTT-SS-SS CS
         zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                    f+ + G C++G++C+F H+
  Csa16g018750.1 70 FWKA-GNCRRGEQCQFLHS 87
                    5555.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.5075789IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-47087IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.0E-888130IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509789.16E-4592310IPR017986WD40-repeat-containing domain
SMARTSM003203.5E-494133IPR001680WD40 repeat
PROSITE profilePS5029422.465101311IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.483101142IPR001680WD40 repeat
PfamPF117155.7E-6116150No hitNo description
PROSITE patternPS006780120134IPR019775WD40 repeat, conserved site
PRINTSPR003202.1E-7120134IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.140.10.101.8E-8131202IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM00320170176213IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.7E-29203434IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.7E-4224262IPR001680WD40 repeat
PfamPF004009.2E-6226262IPR001680WD40 repeat
PROSITE profilePS5008210.843246271IPR001680WD40 repeat
PRINTSPR003202.1E-7249263IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780249263IPR019775WD40 repeat, conserved site
SMARTSM003208.7E-5265302IPR001680WD40 repeat
PfamPF004008.3E-4267301IPR001680WD40 repeat
PROSITE profilePS500828.604272311IPR001680WD40 repeat
PRINTSPR003202.1E-7289303IPR020472G-protein beta WD-40 repeat
SMARTSM00320110347388IPR001680WD40 repeat
SuperFamilySSF509789.16E-45353432IPR017986WD40-repeat-containing domain
SMARTSM003203.4391428IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDFEAPMRYS QPRNFGGVKR QPQAFAADVV PRRPYSPYDN TMKKQGPTKL SRNLVWRQKS  60
TKCQRETGQF WKAGNCRRGE QCQFLHSWSF RFPGLAMVAS LEGHKNDIKG IALPQGSDKL  120
FSVSSDDTLR IWDCHTGQCV HTINLQAEAA AGSLISEGSW VFLGLRNAVK AFNVQTSKDL  180
HLDGVVAGQV HAMTVANGML FAGTSSGTIS VWKANTDSDD VSDPFKYLTS LEGHHSGEVT  240
CFVVGGQLLY SGSVDKTIKV WDLNTLQCVT TLKQHTNTVT SLLCWDKCLI SSSLDGTIKV  300
WAFSENGCLE VTHTRRQEQS VHALCGVHDA EAKPIIFCSY QNGTNGSLEV THTRRQEQSV  360
HALCGVHDAE AKPIIFCSYQ NGTVGIYDLP SFEERGNMFS THTISTLTIG PGGLLFSGDK  420
TGNLRVWSLA AGTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-1610043210322Tako8
6g6n_A1e-1610043210322Tako8
6g6n_B1e-1610043210322Tako8
6g6n_C1e-1610043210322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g018750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466184.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLR0F8M80.0R0F8M8_9BRAS; Uncharacterized protein
STRINGXP_010466184.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein