PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g023230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 154aa    MW: 17432 Da    PI: 9.8341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g023230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-1151102148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmg...kgRtlkqcksrwqkyl 48 
                      +g WT eEdel  ++v+++ g  +Wk I ++++    +R++ qc++rw+k+l
   Csa16g023230.1  51 KGGWTSEEDELWTNVVQMYKGLtSWKNIVERVPglkDKRSEVQCQHRWLKVL 102
                      688****************9889*************99***********986 PP
2Myb_DNA-binding39.71.1e-12108149140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +g+WT++Ed+ll ++v+ + ++   +W++I++ ++ gR +kqc
   Csa16g023230.1 108 KGNWTKDEDDLLSKLVENHMKNdrpQWSKISKQLP-GRIGKQC 149
                      79*********************************.******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.40746102IPR017877Myb-like domain
SuperFamilySSF466891.87E-1749149IPR009057Homeodomain-like
SMARTSM007177.1E-750104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-1753108IPR009057Homeodomain-like
PfamPF139212.6E-1354119No hitNo description
CDDcd001671.96E-754102No hitNo description
PROSITE profilePS5129414.308103153IPR017930Myb domain
SMARTSM007170.0053107149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-15109149IPR009057Homeodomain-like
CDDcd001673.21E-8110149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MASMRLVEWA AVEAEKSESG ISAATQVIST LSIDFSRGCK RVSGPTRRST KGGWTSEEDE  60
LWTNVVQMYK GLTSWKNIVE RVPGLKDKRS EVQCQHRWLK VLDPNLYKGN WTKDEDDLLS  120
KLVENHMKND RPQWSKISKQ LPGRIGKQCG III*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-1951149696MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-1951149696MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g023230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470459.11e-110PREDICTED: myb-related protein 3R-1-like isoform X2
SwissprotQ9SPN32e-47MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLA0A087GL802e-51A0A087GL80_ARAAL; Uncharacterized protein
STRINGXP_010470458.11e-106(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.23e-52myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]