PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g023400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19281.2 Da    PI: 8.2922
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g023400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.81.4e-13250149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+n   r++tf kR++ i  K +ELS LC+a+v  +++s++g  y++
  Csa16g023400.1  2 KKIDNCADRTITFYKRKQKIYNKLNELSLLCGADVGFLVYSNSGIPYTF 50
                    689*****************************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.06E-17167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.222154IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-10153IPR002100Transcription factor, MADS-box
PfamPF003199.6E-16350IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKKIDNCADR TITFYKRKQK IYNKLNELSL LCGADVGFLV YSNSGIPYTF GSPSFEVVAK  60
RFLNGEGSSS TSLPQQSNID VRHKEKMEEL CKVYNNLIEK VDAEKQKGMA MAKAEAEALP  120
VEKDVWWRVN PTTIKDKEVL KQLLEKYKDL YEKLCDEVVV RHQIENAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g023400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418992.11e-112PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLD7LMQ21e-56D7LMQ2_ARALL; Uncharacterized protein
STRINGXP_010418992.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.17e-42AGAMOUS-like 64