PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g023800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 634aa    MW: 70145.8 Da    PI: 5.0539
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g023800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.31.9e-1322766281374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++Ll+cAeav++++l+la+al++++  la++++ +m+++a+yf+e+La+r++r        + p++++    s++l++   f+e +P+lkf+h
  Csa16g023800.1 276 LVHALLACAEAVQQNNLKLADALVKHVGLLATSQAGAMRKVATYFAEGLARRIYR--------IYPRDDD-VALSDTLQI--HFYESCPYLKFAH 359
                     689****************************************************........4466554.334444444..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++++++vH+iD+++ +GlQWpaL+qaLa Rp+gpp +R+Tg+gs    s +e++e+g++L ++A+++gv+fef+ ++ ++l+ l+
  Csa16g023800.1 360 FTANQAILEAFASADKVHVIDLGLHHGLQWPALIQALAVRPNGPPDFRLTGIGS----SLTEIQEVGWKLGQLASNIGVNFEFKSIALNNLSHLK 450
                     ******************************************************....9************************************ PP

            GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +e+L+++p  E +aVn+v++lhrll++++s+++    ++++++s++P++++vveqea+hn++ F++rf+e+l+yys+lfdsle       +++++
  Csa16g023800.1 451 PEMLDIRPgLEYVAVNSVFELHRLLAQPGSIDK----FISTIRSIRPDIMTVVEQEANHNGTVFVDRFTESLHYYSSLFDSLEGP----PSQDRV 537
                     ********88******************99999....*********************************************999....455566 PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++ +lg++i n+vaceg++r+erhetl++Wr+r+++ GFkpv+++++a+kqa++ll+ ++  dgy+vee++g+l+lgW++rpL+++SaWr
  Csa16g023800.1 538 MSELFLGQQILNLVACEGEDRVERHETLNQWRNRFGSGGFKPVNIGSNAYKQASMLLAFHAgADGYNVEENEGCLLLGWQTRPLIATSAWR 628
                     66677********************************************************9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120418.7E-323094IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.9E-3930100No hitNo description
PfamPF120418.7E-32155219IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.9E-39155225No hitNo description
PROSITE profilePS5098564.3250607IPR005202Transcription factor GRAS
PfamPF035146.4E-130276628IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MKREHNHRES STGEGGSSSM TMKEEAAGVD ELLVVLGYKV RSSDMADVAH KLEQLEMVLG  60
GDGVSNLSDE TVHYNPSDLS GWVESMLSDL DPTRTQGKPD SEYDLRAIPG SAVYPREEHV  120
SRRSKRTRVE SEMSTTRSVV VMDSQETGEE AAGVDELLVV LGYKVRSSDM ADVAHKLEQL  180
EMVLGGDGVS NLSDETVHYN PSDLSGWVES MLSDLDPTRT QGKPDSEYDL RAIPGSAVYP  240
REEHVSRRSK RTRVESEMST TRSVVVMDSQ ETGVRLVHAL LACAEAVQQN NLKLADALVK  300
HVGLLATSQA GAMRKVATYF AEGLARRIYR IYPRDDDVAL SDTLQIHFYE SCPYLKFAHF  360
TANQAILEAF ASADKVHVID LGLHHGLQWP ALIQALAVRP NGPPDFRLTG IGSSLTEIQE  420
VGWKLGQLAS NIGVNFEFKS IALNNLSHLK PEMLDIRPGL EYVAVNSVFE LHRLLAQPGS  480
IDKFISTIRS IRPDIMTVVE QEANHNGTVF VDRFTESLHY YSSLFDSLEG PPSQDRVMSE  540
LFLGQQILNL VACEGEDRVE RHETLNQWRN RFGSGGFKPV NIGSNAYKQA SMLLAFHAGA  600
DGYNVEENEG CLLLGWQTRP LIATSAWRIN RVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6728362726378Protein SCARECROW
5b3h_A6e-6728362725377Protein SCARECROW
5b3h_D6e-6728362725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g023800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1777340.0GQ177734.1 Arabidopsis thaliana ecotype Ag-0 RGL1 gene, complete sequence.
GenBankGQ1777530.0GQ177753.1 Arabidopsis thaliana ecotype Nok-3 RGL1 gene, complete sequence.
GenBankGQ1777550.0GQ177755.1 Arabidopsis thaliana ecotype Wa-1 RGL1 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470511.10.0PREDICTED: DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLA0A178W7M80.0A0A178W7M8_ARATH; RGL1
STRINGXP_010470510.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]