PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g024140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21561 Da    PI: 4.8839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g024140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.56.3e-121251140
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    k+ie k  + v fskRr+g+   A+EL+ L da++a+i+ 
  Csa16g024140.1 12 KKIETKDPQAVVFSKRRKGLYSRASELCLLSDAQIAIIVT 51
                    679999999*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-7164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.484450IPR002100Transcription factor, MADS-box
CDDcd002661.24E-16582No hitNo description
PRINTSPR004042.1E-5626IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-131195IPR002100Transcription factor, MADS-box
PfamPF003192.1E-111363IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-52641IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-54162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGGLKRKIDR GKKIETKDPQ AVVFSKRRKG LYSRASELCL LSDAQIAIIV TPISSNSHAA  60
FYTFGHSSIN GVVVAFLADQ TPLWDDDDDE KLGFWWEDES LANSDYPEDL GAAIDSMTKM  120
LHDLKELQNK QRDRVDVEEK EKGGSHVTYL KNDMKELEDK QRDLVEVEKE NNNNASRENV  180
GGSCNQGARA GGL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g024140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474146.11e-142PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-51AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0HI751e-61R0HI75_9BRAS; Uncharacterized protein
STRINGXP_010474146.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.15e-54AGAMOUS-like 97
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]