PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g024170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 110aa    MW: 12383.1 Da    PI: 10.1946
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g024170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY29.51.5e-0986107223
                     --SS-EEEEEEE--TT-SS-EE CS
            WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                     +Dg++WrKYGqK++k+s + r 
  Csa16g024170.1  86 NDGFTWRKYGQKPIKDSLHKRL 107
                     7****************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.56980109IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-882109IPR003657WRKY domain
SuperFamilySSF1182901.01E-783109IPR003657WRKY domain
PfamPF031063.8E-786109IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MAKDALTTSR LYREISSVST EQLINTILDS FSLALSFVDS PIPPPHHESS SQNMAGLVPR  60
RSSKKKFCGM KGIENYRDDS PNPRPNDGFT WRKYGQKPIK DSLHKRLVY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15965RRSSKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g024170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470533.15e-48PREDICTED: probable WRKY transcription factor 63
SwissprotQ9C6H53e-46WRK63_ARATH; Probable WRKY transcription factor 63
TrEMBLA0A384L7K97e-44A0A384L7K9_ARATH; WRKY63
TrEMBLC0SV197e-44C0SV19_ARATH; Uncharacterized protein At1g66600 (Fragment)
STRINGXP_010474147.18e-65(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.12e-40ABA overly sensitive mutant 3
Publications ? help Back to Top
  1. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]