PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g024190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 244aa    MW: 27642 Da    PI: 5.7203
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g024190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.32.4e-21103163259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK++k s + rsYYrC++a   +C+++k+v+  ++ p v  +tY g+H ++
  Csa16g024190.1 103 DDGFTWRKYGQKTIKTSVHQRSYYRCAYAkehNCNATKRVQMIQDCPPVYRTTYMGQHICK 163
                     8**************************998999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.69597160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-2298164IPR003657WRKY domain
SuperFamilySSF1182902.48E-22100163IPR003657WRKY domain
SMARTSM007741.1E-30102164IPR003657WRKY domain
PfamPF031066.0E-22103163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFSNIDHKAL AALLHGQGCA NSLKTLLDNR EISSVLIEPL INTILDSFSL ALSFVDSPNP  60
PLHHESSSQN MAGLVPQRSS KKEICGIHVI KNYRDESPTP RPDDGFTWRK YGQKTIKTSV  120
HQRSYYRCAY AKEHNCNATK RVQMIQDCPP VYRTTYMGQH ICKSIPVYDD TYGSEMIQFD  180
QVVSESVMPI FTSTDHEAIT IEEDKATDHT MNQECDINDF LVAYDHFWPN EFPSFSYGDS  240
VFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-14103163969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00066PBMTransfer from AT1G66600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g024190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470533.10.0PREDICTED: probable WRKY transcription factor 63
SwissprotQ9C6H51e-123WRK63_ARATH; Probable WRKY transcription factor 63
TrEMBLR0GDS11e-136R0GDS1_9BRAS; Uncharacterized protein
STRINGXP_010470533.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.11e-125ABA overly sensitive mutant 3
Publications ? help Back to Top
  1. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]