PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g025360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 329aa    MW: 36954.5 Da    PI: 8.003
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g025360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.11.9e-15252276226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tG C+yGd+C+FaHg
  Csa16g025360.1 252 KTELCNKWQETGACPYGDNCQFAHG 276
                     9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.3E-19245283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-11248282IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-9250277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.539250278IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-12252276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-12284317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8284319IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972288316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEKLAASTVT DLACVTALNS NSPPPPLSPV SEKSFSNKHQ EEFAASFASL YNSIFSPDSQ  60
FPTSLSLSPS PPSSSSPPAR DDTTTEHRLR QARLILEYDE LNEHYELCIN RLQSLLTELD  120
SLRRENDALR FENSDLLKLI HLSTSSSSSS SSSVFSPPPI HNRQFRHQIS DFAPIHKHHS  180
RSAKRNSLPK SISVRSPGYL KINQGRSHGF GASDRQTSQL SNTDSVSSQK VCVETKEREA  240
LELEVYRQGM TKTELCNKWQ ETGACPYGDN CQFAHGIDEL RPVIRHPRYK TEVCRMIVTG  300
AACPYGHRCH FRHSLTDQER MMMMMLTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21252314567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g025360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132881e-107AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026841e-107CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470553.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N31e-156C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLR0GI871e-179R0GI87_9BRAS; Uncharacterized protein
STRINGXP_010470553.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-153C3H family protein