PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g027610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 586aa    MW: 65645.7 Da    PI: 5.1504
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g027610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.45e-26253307155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Csa16g027610.1 253 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 307
                     68****************************************************8 PP
2Response_reg808.1e-27721781107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  Csa16g027610.1  72 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHG 164
                     89*********************.***************999999**********************5543.7********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a d+l Kp+ ++el
  Csa16g027610.1 165 ACDYLLKPIRMKEL 178
                     *********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.4E-14857579IPR017053Response regulator B-type, plant
SuperFamilySSF521722.28E-3569191IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-4369192No hitNo description
SMARTSM004485.6E-3270182IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.75571186IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.8E-2472179IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.51E-3173186No hitNo description
Gene3DG3DSA:1.10.10.609.6E-28250312IPR009057Homeodomain-like
SuperFamilySSF466893.94E-16251311IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-22253307IPR006447Myb domain, plants
PfamPF002492.4E-7255306IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
HGDRYLNNAE IFGLCSFIAK QKPPLTTFPK KEHSPLSHLS LFLSSSVSVS LSFLFLPANM  60
EKGGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGYDIVI  120
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETSRVMKG VQHGACDYLL KPIRMKELKI  180
IWQHVLRKKL QEVRDIEGCG YEGGTDWITR YDEAHFLGGG EDVSFCKKRK DFDFEKKLLL  240
QDESDPSSSS SKKARVVWSF ELHQKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS  300
HLQKYRLYLS RLEKEKELKC YSGGVKSIDS SPKDAEVNSG HQSPGKSSFV FSGGIFQKAT  360
ETDPKPLASA SLSDPNTDVI MPPKTKKTRI GFDPPISSPA FDSLLPWNDV PEVLESKPVL  420
YENSFLQQQP LPSQSSYVAN SAPAIMEEEM KPPYETPVGG SSVNIDEFLM PQDKIPTVTI  480
QDLDPSALSS MKLQEFSSNV TNNTEAILRS WELPESNHSA SLDTDLDLSW LQGERFLANT  540
GLQFQDYSSS PSFLSELPPH LWYGNERLPD PDEYSFMVDQ GLFIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17249312163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g027610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2282160.0AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470687.10.0PREDICTED: two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLR0GH620.0R0GH62_9BRAS; Two-component response regulator
STRINGXP_010470687.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]