PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 353aa    MW: 40006.6 Da    PI: 5.8862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31212271159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Csa16g028000.1 212 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 271
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-33197273IPR003657WRKY domain
SuperFamilySSF1182905.1E-28205273IPR003657WRKY domain
PROSITE profilePS5081129.023207273IPR003657WRKY domain
SMARTSM007741.9E-37212272IPR003657WRKY domain
PfamPF031061.3E-27213271IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGIDLSLKFE AEEKDKDEEG SKYNCNENKE DEEHDASGGD EDEQMVKEDE EEDSCLGSRT  60
REEENEREEI LQLQIQMESV KEENTRLRKL VEQTLEDYRH LEMKFPVIDQ TKKMGLETFL  120
GTKGKWCVDI TSKARKRGPE ICPSVERELG LSLSLQKKQK QKESKEAVQS HHHQQSYNNS  180
SLDMNAPRII SSSQGNRKAR VSVRARCETA TMNDGCQWRK YGQKTAKGNP CPRAYYRCTV  240
APGCPVRKQV QRCLEDMSIL ITTYEGTHNH PLPVGATAMA STASTSPFLL LDSSDNLSHP  300
SYYQTPSIID SSLITYPQNS TTNKRTIRSL NFDGPSRGDH VSSPQNQLNW MM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23199275176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134159RKRGPEICPSVERELGLSLSLQKKQK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935250.0AB493525.1 Arabidopsis thaliana At1g68150 mRNA for hypothetical protein, partial cds, clone: RAAt1g68150.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093573.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F00.0WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLR0I7F20.0R0I7F2_9BRAS; Uncharacterized protein
STRINGCagra.1111s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-169WRKY DNA-binding protein 9