PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g028020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 424aa MW: 47869.5 Da PI: 8.8866

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g028020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Csa16g028020.1 71 YVCEICNQGFQRDQNLQMHRRRH 93 9*********************9 PP
2	zf-C2H2	13.7	0.00018	150	171	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ Csa16g028020.1 150 ICERCSKGYAVQSDYKAHLKTC 171 7*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.18E-5	68	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	70	93	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	71	93	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.021	71	89	No hit	No description
SMART	SM00355	0.0052	71	93	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	113	143	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	110	149	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MIDYERSNNT KNLNNHHRRN PPPSSSSSDL LPDGNGAAVT QKRKRRPAGT PDPEAEVVSL 60 SPRTLLESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KRETNEEVRK RVYVCPEPTC 120 LHHNPCHALG DLVGIKKHFR RKHSNHKQWI CERCSKGYAV QSDYKAHLKT CGTRGHSCDC 180 GRVFSRVESF IEHQDNCTVR RSQPSNHRLP QQQHTTNGTQ TTLTADKSEN ADLSIGPILP 240 GHPLQRRQSP PSDQQPSSLL YPFGSLCATN GSIELQLLPS RYSTNETSLS LSIGTLDQTT 300 MSEVERKSYE KGETSLEREE ARREVKRQIE IAELEFAEAK RIRQHARAEL HKAQLFREDA 360 SRRISATMML ITCHNCKQHF QTPAASVPPP SQPHCTDEST SLAVSYVSSA TTEGEKASDR 420 ASS*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MIDYERSNNT KNLNNHHRRN PPPSSSSSDL LPDGNGAAVT QKRKRRPAGT PDPEAEVVSL  60
SPRTLLESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KRETNEEVRK RVYVCPEPTC  120
LHHNPCHALG DLVGIKKHFR RKHSNHKQWI CERCSKGYAV QSDYKAHLKT CGTRGHSCDC  180
GRVFSRVESF IEHQDNCTVR RSQPSNHRLP QQQHTTNGTQ TTLTADKSEN ADLSIGPILP  240
GHPLQRRQSP PSDQQPSSLL YPFGSLCATN GSIELQLLPS RYSTNETSLS LSIGTLDQTT  300
MSEVERKSYE KGETSLEREE ARREVKRQIE IAELEFAEAK RIRQHARAEL HKAQLFREDA  360
SRRISATMML ITCHNCKQHF QTPAASVPPP SQPHCTDEST SLAVSYVSSA TTEGEKASDR  420
ASS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-17	147	197	5	55	Zinc finger protein JACKDAW
5b3h_F	1e-17	147	197	5	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g028020.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT026478	0.0	BT026478.1 Arabidopsis thaliana At1g68130 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470737.1	0.0	PREDICTED: protein indeterminate-domain 14-like
Refseq	XP_010470738.1	0.0	PREDICTED: protein indeterminate-domain 14-like
Swissprot	Q9C9X7	0.0	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	D7KVR7	0.0	D7KVR7_ARALL; Atidd14-domain 14
STRING	XP_010470737.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM693	28	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	0.0	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]