PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 323aa    MW: 35371.6 Da    PI: 8.4696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12238262226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tGtC+y d C+FaHg
  Csa16g028220.1 238 KTELCNKWQETGTCPYDDHCQFAHG 262
                     9***********************8 PP
2zf-CCCH21.25.1e-07275300126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++ +C+yG rC+F H+
  Csa16g028220.1 275 YKTEVCRMVLAGDICPYGHRCHFRHS 300
                     9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-17231269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10233268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906236264IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7236263IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10238262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9270305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-13270303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272274302IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5274301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MENEIAPFNY SGSSAGVVGI KKSQGDSSCG GGGGVVSSSL FSDQLYKSSR NIMQQRQDMV  60
NREALCYTRL HEASLEAEAL RLENTELRSM NRHLKNELNS LIRSSIQSRL DSDRVPLRML  120
SNLSIGGKDG VENQNRTVKR DDVSDESPTS VMENEDMNRS SLPKSISVRS SGYSKATQGG  180
GGGAAQSGKS RGTIPKTGTC GGQLSTTQKV YVRGGGGGKK EDQEEEIEVE VYNQGMTKTE  240
LCNKWQETGT CPYDDHCQFA HGIKELRPVI RHPRYKTEVC RMVLAGDICP YGHRCHFRHS  300
LSEQEKLVAA GYKPKSSLKL HT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22238303570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260770.0BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBankDQ0565140.0DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470763.10.0PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X1
SwissprotQ9C9F51e-164C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLR0GI950.0R0GI95_9BRAS; Uncharacterized protein
STRINGXP_010470762.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-129C3H family protein