PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 685aa    MW: 77919.8 Da    PI: 6.4214
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like491.4e-15169218555
         G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      Wt+e H +F+ a++ L G+++  Pk+il++m+ + Lt  +v+SHLQkY++
  Csa16g028230.1 169 LWTNERHMKFLAALSIL-GEKEFRPKSILRIMNDPNLTHLQVASHLQKYKT 218
                     6****************.9999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.0E-7684No hitNo description
SuperFamilySSF521729.11E-7882IPR011006CheY-like superfamily
PROSITE profilePS5011010.57914157IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466895.91E-14165222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-17167222IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-15168218IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MVESLTPQNV DDIFVLLIEH DTASVASLTS MLEPFSKKVI SMDAVSKALS IIEKQKKDIG  60
LVIANIEMPQ LDSYSFLTAL LQKNIPLTYK DIDQIEAFRA SLKRQRTSQA SLLGRRHFIS  120
RVTTSEAYHK RKIITNVEWK SKPGCPIEVE NKRREWMKVD NSVGRRQSLW TNERHMKFLA  180
ALSILGEKEF RPKSILRIMN DPNLTHLQVA SHLQKYKTQI ERIRDVLSRN EWKSTNKTVE  240
YPSDYKYPFK TSNLTKNLIA SNSLWNSLRK KISSSSSPIN PFLFKNPTVE RKKNMSKFHH  300
NKKLDLNDHS RLGNIFNKSS MNVASIPSTI SSNPTYNNLS IGNANHIGLV HTSLGSEIIH  360
ILSDLPSNTC AYQTESVRVS IPHYDPNPLH PPKFVHEDDI NHINLDFPSV PASFVRLEDL  420
CNLDENNNFL PNSTMNSFET NIDQMSSNPL IENHSHHRIN MNHVDWHPST ENYVFPQTDM  480
NITFPGNNTN QKESVSLKDG YVPPEIKIPS EVDINLMGIG YFGENVLPQE EVGMNHVGLV  540
SGEMPYEFPI KTNMTSFESN TNEGPAVSIE NLISFDIGVE KNMAYWLEET GFSEKNNPLP  600
SSYLTDNIAF RKPINSTLNT SMENHDHSIS INIGSTSQQH NTMESCEYHN VEAVNQKDDI  660
GGEDHLEDYR DCIDWIDQMM NKDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415439.10.0PREDICTED: putative two-component response regulator-like APRR6
SwissprotQ9C9F60.0APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLR0I9140.0R0I914_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010474201.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.10.0pseudo-response regulator 6