PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26564.1 Da    PI: 7.0855
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.92.3e-0720581350
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                    f +R  g  KKA ELSvLC+  +  + + + +++l+ ++
  Csa16g028740.1 20 FKQRFPGFKKKAIELSVLCGNSIGFVCYTPdDNNLHIWP 58
                    566777888**************9888876257788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.62E-10986IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.9281048IPR002100Transcription factor, MADS-box
PfamPF003191.0E-61654IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAPRVRKVCV DDLKMKKKLF KQRFPGFKKK AIELSVLCGN SIGFVCYTPD DNNLHIWPDL  60
QEKPQALTQL LAKFNALSDH KRKNNACDLY DFPDIKGLSG EDLRRHVDNL DSHLLRIKQQ  120
KISLLRRGNS KNPKPKETEE GDRVSDRLGF GHDVFGGYHE TAMGSCAVSR DVGVSDSSLL  180
DPFKSDYFPT DNFGVCANNG AWDLSWMDLD FSSTLFPAGY DPLLGATDEY QTLVTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470829.11e-176PREDICTED: agamous-like MADS-box protein AGL49
TrEMBLD7KXG18e-84D7KXG1_ARALL; Uncharacterized protein
STRINGXP_010470829.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.12e-48AGAMOUS-like 49