PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g030930.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 344aa    MW: 39280.2 Da    PI: 8.2059
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g030930.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.5e-211353545
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    n   rq t++kR++gi+KKA+ELS+LCd++v++++fs+tgk
  Csa16g030930.2 13 NMNARQCTYAKRKHGIMKKAKELSILCDIDVLLLMFSPTGK 53
                    6778***********************************98 PP
2K-box16.24.3e-071271942088
           K-box  20 elakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                     +++ L+ +++ + +  R   + +L+++ ++ +LqqLe+ L  sl +i ++K  +   q ++l   e ++q
  Csa16g030930.2 127 KVRFLRTQLSDIHT--RLSCWTNLDNInNVDDLQQLENSLRLSLAQISARKASIPQHQQQQLMSSECKNQ 194
                     44444444444443..567778888873589********************9887777777666555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.35E-22180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.063153IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-25160IPR002100Transcription factor, MADS-box
CDDcd001203.55E-20253No hitNo description
PRINTSPR004041.8E-14323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-171354IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-143859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.8114241IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRVKLKIMK LRNMNARQCT YAKRKHGIMK KAKELSILCD IDVLLLMFSP TGKASLCLGK  60
NSIGEVIAKF AQLTPQERAK RSFCLRLDRK LENLEALKKM FMKLDHDVDI SEFLDRRTPT  120
VEVLSEKVRF LRTQLSDIHT RLSCWTNLDN INNVDDLQQL ENSLRLSLAQ ISARKASIPQ  180
HQQQQLMSSE CKNQLQTEID IDFGMENFSW VRTTDENMNV LIKEENPILH LHQMYRDITC  240
CASSSLGNYS GLSTPKLETG SIPGIPADPS LQFGNPSFLN DQKLQKLAEW NLLGSPADYY  300
FSQIFEASHK PQLGGNKYNW TSPETLPYVA IFDDPLFFWP SEK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g030930.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941121e-112AB094112.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, partial cds.
GenBankAB1150131e-112AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470943.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_010470944.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA43e-74AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A178WKN70.0A0A178WKN7_ARATH; AGL94
STRINGXP_010470943.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.10.0AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]