PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g030930.3
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22343.2 Da    PI: 10.5176
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g030930.3genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.72.3e-211353545
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    n   rq t++kR++gi+KKA+ELS+LCd++v++++fs+tgk
  Csa16g030930.3 13 NMNARQCTYAKRKHGIMKKAKELSILCDIDVLLLMFSPTGK 53
                    6778************************************8 PP
2K-box18.77e-081181901992
           K-box  19 qelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                     ++++ L+ +++ + +  R   + +L+++ ++ +LqqLe+ L  sl +i ++K  +   q ++l   e ++q +n+
  Csa16g030930.3 118 EKVRFLRTQLSDIHT--RLSCWTNLDNInNVDDLQQLENSLRLSLAQISARKASIPQHQQQQLMSSECKNQVKNH 190
                     444445555555443..667788888883589*********************9999999988888877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.063153IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-25160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-24293IPR002100Transcription factor, MADS-box
CDDcd001202.12E-19253No hitNo description
PRINTSPR004044.7E-15323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-181354IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-153859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.69106194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGRVKLKIMK LRNMNARQCT YAKRKHGIMK KAKELSILCD IDVLLLMFSP TGKASLCLGK  60
NSIGEVIAKF AQLTPQERAK RKLENLEALK KMFMKLDHDV DISEFLDRRT PTVEVLSEKV  120
RFLRTQLSDI HTRLSCWTNL DNINNVDDLQ QLENSLRLSL AQISARKASI PQHQQQQLMS  180
SECKNQVKNH KFGH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g030930.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1150130.0AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470946.11e-132PREDICTED: agamous-like MADS-box protein AGL30 isoform X3
SwissprotQ1PFA47e-71AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A178WKN71e-107A0A178WKN7_ARATH; AGL94
STRINGXP_010470943.11e-129(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-110AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]